Bioinformatics: from Algorithms to Applications 2020 has ended

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Bioinformatics: from Algorithms to Applications 2020

13:45 MSK

Opening notes Zoom ConferenceAnton Korobeynikov • Alla Lapidus

14:00 MSK

MGnify: Introduction to course organisation Zoom MgnifyAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova

14:15 MSK

MGnify: services offered (Part 1) Zoom ConferenceAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova

15:30 MSK

MGnify: assembly pipeline and website (Part 2) Zoom MgnifyAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova

17:00 MSK

Indexing large and numerous sequencing datasets Zoom ConferencePierre Peterlongo Q & A: keynotes Zoom ConferencePierre Peterlongo • Robert Fulton • Tatiana Tatarinova • Inna Dubchak • Terry Gaasterland • Stephen Nayfach

17:15 MSK

A scalable prokaryotic taxonomy in the age of big data Zoom ConferencePhil Hugenholtz

17:30 MSK

The McDonnell Genome Institute at Washington University: Contributions towards the Human Reference Genome Zoom ConferenceRobert Fulton

17:45 MSK

Turning systems off: Negative regulators in gene expression programs Zoom ConferenceTerry Gaasterland

18:00 MSK

Assessing the quality of metagenome-assembled viral genomes Zoom ConferenceStephen Nayfach

18:15 MSK

VISTA family of tools for comparative genomics Zoom ConferenceInna Dubchak

18:30 MSK

Local Ancestry Zoom ConferenceTatiana Tatarinova

19:00 MSK

MGnify: Hands-on review (parts 1-2) Zoom MgnifyAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova

11:00 MSK

Installing and Searching BLAST Databases in a Data Science Framework Zoom ConferenceBrian Fristensky MGnify: Hands-on review (parts 1-2) Zoom MgnifyAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova Q & A: posters Zoom Conference

11:05 MSK

Using comparative transcriptomics to dissect the mechanisms of early maturation trait in garden pea (Pisum sativum L.) Zoom ConferenceYury V. Malovichko

11:10 MSK

Comparative in silico miRNA and their target analysis in Cestrum nocturnum L. and Cestrum diurnum L. in response to stress and flower-anthesis Zoom ConferenceNASREEN BANO

11:15 MSK

Bioinformatics analysis of short-chain fatty acid production potential in the human Zoom ConferenceMaria Frolova

11:20 MSK

Pseudomonas Phage PaBG — A Jumbo Member of an Old Parasite Family Zoom ConferencePeter Evseev

11:25 MSK

Secondary Structure Prediction by Combination of Formal Grammars and Neural Networks Zoom ConferencePolina Lunina

11:30 MSK

iJump: a fast tool for tracking bacterial mobile elements rearrangements in course of adaptive laboratory evolution Zoom ConferenceSemen Leyn

11:35 MSK

Dissecting the evolutionary mechanisms of the 3-domain Cry toxins diversity with CryProcessor Zoom ConferenceAnton E. Shikov

11:40 MSK

Metatranscriptome analysis of an endemic Lake Baikal amphipod microbiome Zoom ConferenceJulie Ozerova

11:45 MSK

Whole Genome Sequencing Of 101 Neglected African Crops Zoom ConferenceSamuel Muthemba

11:50 MSK

Genome assembly and search for genetic markers of adaptation of shore flies (Diptera, Ephydridae) to extreme habitats Zoom ConferenceEkaterina Yakovleva

11:55 MSK

Predicting CAZy profiles in wood-decay fungal communities with molecular ecological networks Zoom ConferenceVladimir Mikryukov

12:00 MSK

Metagenomic analysis of bacterial communities associated with sponges from the White Sea Zoom ConferenceAnastasia Rusanova

12:05 MSK

Genomic insights into the carbon and energy metabolism of the first obligate autotrophic acetogenic bacterium Zoom ConferenceFrolov E.N.

12:10 MSK

Preliminary analysis of the soil microbiota associated with the gigantism of the plants of the Chernevaya Taiga of Siberia Zoom ConferenceMikhail Rayko

12:15 MSK

Comparative analysis of pangenome structure in generalist and specialist bacterial species Zoom ConferenceDaria Nikolaeva

12:20 MSK

RAD54L mutations lead to adenocarcinomas due to the formation of recombinant DNA intermediates Zoom ConferenceBogdan Shcheglov

12:25 MSK

Comparative analysis of Rhizobiales genomes using ANIClust: species reclassifications and identification of unauthentic genomes and false type strains Zoom ConferenceCamila Gazolla Volpiano

12:30 MSK

Metagenomic Analysis Using k-mer-based Tools Reveal the Presence of Heavy Metal Response Genes in Cyanobacteria found in Copper Mining Sites of Benguet Province, Philippines Zoom ConferenceLibertine Rose S. Sanchez

12:35 MSK

Analysis of genetic variants associated with infection of Mycobacterium leprae in exomes of Mexican mestizo population Zoom ConferenceMiguel Elenes

12:40 MSK

Genome assembly of heterozygous tropical trees - will the real (pan)genome stand up? Zoom ConferenceHugo Volkaert

12:45 MSK

Genome-wide characterization of postinfectious functional dyspepsia-associated antibiotic-resistant Escherichia coli isolates from Mexico Zoom ConferenceJosé Antonio Magaña-Lizárraga

12:50 MSK

Strain specific traits in the protein production associated with vegetative cells-to-spores transition in Bacillus thuringiensis Zoom ConferenceKirill Antonets

12:55 MSK

Metagenomic analysis of virus diversity in cave water habitats Zoom ConferenceKatarina Bačnik

13:00 MSK

Reducing redundancy of input data sets to improve inference of transcription factor binding sites Zoom ConferencePavel Vychik

13:05 MSK

Computational tools for the de novo assembly of bacterial genomes: a comparative study. Zoom ConferenceMatheus Brito de Oliveira • Gustavo Silva

13:10 MSK

First insights in transcriptome-derived SNPs of two cryptic species Lasiopodomys gregalis and L. raddei (Cricetidae, Rodentia) Zoom ConferenceMaria Skazina

13:15 MSK

TRANSCRIPTOME ANALYSIS OF GRASS FROG RANA TEMPORARIA Zoom ConferenceVictoria Dikaya

13:20 MSK

Genomic diversity and phenotypic characterization of drug resistance in Mycobacterium abscessus complex between Colombian and U.S. strains Zoom ConferenceLaura Natalia Victoria

13:25 MSK

Transcriptome analysis revealed abnormalities in skeletal muscle regeneration affected by mutations in LMNA gene Zoom ConferenceOksana Ivanova

13:30 MSK

Comparison of extraction methods and sequence platforms for complex water sample Zoom ConferenceOlivera Maksimović Carvalho Ferreira

13:35 MSK

The elements of CRISPR-Cas-like system in genomes of 3 ecotypes of Arabidopsis thaliana Zoom ConferenceIvan Petrushin

13:40 MSK

Genome Assembly of Microbes By Leveraging Evolutionary Relationships Zoom ConferenceUrmi Shah

13:45 MSK

The diversity of Methanogenic and Methanotrophic Archaea in bottom sediments of the Yenisei River Zoom ConferenceSvetlana Evgrafova

13:50 MSK

Microbiome in tundra and forest tundra permafrost soils, southern Yamal, Russia Zoom ConferenceIvan Alekseev

13:55 MSK

Computer-aided screening of the LDH inhibitors via structural filtration.. Zoom ConferenceElina Smolkina

14:00 MSK

MGnify: Viral annotation (Part 3) Zoom MgnifyAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova

15:15 MSK

MGnify: MAG generation (Part 4) Zoom MgnifyAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova

17:00 MSK

The 3C criterion: Contiguity, Completeness and Correctness to assess de novo genome assemblies Zoom ConferenceJose Arturo Molina-Mora Q & A: talks Zoom Conference

17:05 MSK

Impact of genetic variation on the association rate constant of von Willebrand factor and GPIbα platelet receptor Zoom ConferenceMaria Gefen

17:10 MSK

Network perspective on metabolic diversity among mononuclear phagocytes Zoom ConferenceAnastasiia Gainullina

17:15 MSK

Shifts in the microbial community of soil in long-term burial conditions Zoom ConferenceKichko A.A.

17:20 MSK

Specialized Metabolism Gene Clusters from Red Sea Brine Pool Microbial Metagenomes Zoom ConferenceLaila Ziko

17:25 MSK

A platform for genomic characterization of Enterococcus spp. Zoom ConferenceRafaella Santana Bueno

17:30 MSK

A rigorous approach to UPGMA phylogeny by multidimensional scaling of pairwise distances and bioinformatic outcomes for a commercially significant geneset Zoom ConferenceRobert Moore • Michael Barnathan

17:35 MSK

Do multiple long-distance transfers shape TBEV spread pattern? Zoom ConferenceAndrei A. Deviatkin

17:40 MSK

Comparative genome analyses of an extensively drug-resistant (XDR), uropathogenic Morganella morganii SMM01 Zoom ConferenceChanakya Pachi Pulusu

17:50 MSK

Simple sequence repeats (SSRs) indicate evolution hotspots in goldfish (Carassius auratus) and Cyprinidae fish Zoom ConferenceMikhail Orlov

17:55 MSK

Pannopi: prokaryotic genome assembly and annotation pipeline. Zoom ConferenceDanil Zilov

18:00 MSK

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets Zoom ConferenceCamille Marchet

18:05 MSK

Metagenomic analysis of colon biopsy samples in patients with ulcerative colitis Zoom ConferenceNikita Bulantsev

18:10 MSK

The search for genetic risk factors of ischemic stroke with the genome-wide association study and machine learning methods Zoom ConferenceGennady V. Khvorykh

18:15 MSK

VarQuest+: modification-tolerant database search of secondary metabolites mass spectra Zoom ConferenceAlexey Gurevich

18:20 MSK

A zero inflated log-normal model for inference of sparse microbial association networks Zoom ConferenceVincent Prost

18:25 MSK

Single-cell ChIP-seq imputation with machine learning models leveraging bulk ENCODE data Zoom ConferenceSteffen Albrecht

18:30 MSK

Preliminary Analysis of Resistome in Mycobacterium abscessus Zoom ConferenceShay Lee Chong

18:35 MSK

Genome-wide inference of bacterial transcription factor binding sites: new method and its applications Zoom ConferenceYevgeny Nikolaichik

18:40 MSK

Metagenomic Analysis Using k-mer-based Tools Reveal the Presence of Heavy Metal Response Genes in Cyanobacteria found in Copper Mining Sites of Benguet Province, Philippines Zoom ConferenceLibertine Rose S. Sanchez

18:45 MSK

Efficient dynamic associative dictionary for large k-mer sets Zoom ConferenceYoann Dufresne

18:50 MSK

Black cat in a dark room: search for new viruses in metagenomes Zoom ConferenceYulia Yakovleva

18:55 MSK

Transcriptome meta-analysis of low phosphate-treated rice roots reveals novel players in phosphate starvation response of crops Zoom ConferenceYugo Lima-Melo

19:00 MSK

Assembly and Annotation of Ashkenazi Reference Genome Zoom ConferenceAlexey Zimin MGnify: Hands-on review (parts 3-4) Zoom MgnifyAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova

19:05 MSK

Serratus: Ultra-deep search to discover novel coronaviruses Zoom ConferenceArtem Babaian

19:15 MSK

Closing Remarks Zoom ConferenceAnton Korobeynikov • Alla Lapidus

11:00 MSK

MGnify: Hands-on review (parts 3-4) Zoom MgnifyAlexandre Almeida • Rob Finn • Lorna Richardson • Ekaterina Sakharova