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avatar for Hugo Volkaert

Hugo Volkaert

Center for Agricultural Biotechnology, Kamphaeng Saen Campus, Nakhon Pathom 73140, Thailand
Principal investigator
Kamphaengsaen, Nakornpathom province, Thailand
I am a forest ecologist and population geneticist hoping to use DNA sequence data to study the evolution and adaptation of tropical trees to their environment. Currently trying to assemble tree genomes on a shoestring budget, using low coverage shot gun sequencing of single libraries read by Illumina. I am finding that these single libraries contain about all the information I need though I cannot get access to it using regular genome assembling programmes. So I am in the process of developing my own pipeline to recover phased contiguous fragments of the single copy gene rich regions in plant genomes. So talk to me about k-mers, sequence assembly, heterozygosity, and the power of paired reads.
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  • Filter By Date Bioinformatics: from Algorithms to Applications 2020 Jul 27 -29, 2020
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